PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_34959_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 210aa    MW: 23894.3 Da    PI: 6.8819
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_34959_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17249148
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                         +g WT +Ed++lvd+v+ +G g W+  a++ g++R++k+c++rw++yl
  cra_locus_34959_iso_2_len_629_ver_3  2 KGHWTSQEDKILVDYVRIHGEGKWRDLAQKTGLKRCGKSCRLRWLNYL 49
                                         789*******************************************97 PP

2Myb_DNA-binding47.54e-155799347
                                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                         + +++E++l+++++++lG++ W++Ia +++ gR+++++k++w++ 
  cra_locus_34959_iso_2_len_629_ver_3 57 NISEDEEDLIIKLHRLLGNR-WTLIAGRLP-GRSGNEIKNYWNTT 99
                                         6699****************.*********.************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.2E-13151IPR001005SANT/Myb domain
PROSITE profilePS5129425.705153IPR017930Myb domain
PfamPF002491.7E-15249IPR001005SANT/Myb domain
SuperFamilySSF466892.53E-28296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-22356IPR009057Homeodomain-like
CDDcd001671.77E-10549No hitNo description
SMARTSM007175.0E-1454102IPR001005SANT/Myb domain
PROSITE profilePS5129418.79754104IPR017930Myb domain
PfamPF002495.8E-145799IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2257104IPR009057Homeodomain-like
CDDcd001678.58E-1159100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
XKGHWTSQED KILVDYVRIH GEGKWRDLAQ KTGLKRCGKS CRLRWLNYLR PGIKLGNISE  60
DEEDLIIKLH RLLGNRWTLI AGRLPGRSGN EIKNYWNTTL SKKIVADEKN HNHNMTVTMQ  120
TQTDELEDDK KILLLSSSSD HDESVVANVS DPPPSLQHQP KGPNNTVKRS SITGCNNNNN  180
NNNDDDESET SFREYITNIS SNLPIMEGEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-25210427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889357.11e-56PREDICTED: myb-related protein 308 isoform X2
TrEMBLD7TZT53e-56D7TZT5_VITVI; Putative uncharacterized protein
STRINGVIT_09s0002g01410.t018e-56(Vitis vinifera)